Miguel Ponce de León

Code

PhysiCelldFBA C++/Python

Integrates dynamic flux balance analysis into PhysiCell for multiscale cancer modelling.

PhysiBoSS C++

Boolean signalling framework coupled with PhysiCell for agent-based tumour simulations.

MTEApy Python

Metabolic task enrichment analysis for single-cell and bulk transcriptomics data.

PCTK Python

Toolkit for automating PhysiCell simulation setup, execution, and output analysis.

EpiSim.jl Julia

Metapopulation epidemic simulation engine built in Julia for high-performance modelling.

EpiSim-EMEWS Python

EMEWS-based workflow for extreme-scale model exploration with EpiSim.


Datasets

COVID-19 Flow-Maps

Mobility flow datasets across Spanish regions during the COVID-19 pandemic, used for epidemic spread analysis.


Personal

This website

Personal homepage built with Eleventy (11ty) and deployed on GitHub Pages.