Code
PhysiCelldFBA
C++/Python
Integrates dynamic flux balance analysis into PhysiCell for multiscale cancer modelling.
PhysiBoSS
C++
Boolean signalling framework coupled with PhysiCell for agent-based tumour simulations.
MTEApy
Python
Metabolic task enrichment analysis for single-cell and bulk transcriptomics data.
PCTK
Python
Toolkit for automating PhysiCell simulation setup, execution, and output analysis.
EpiSim.jl
Julia
Metapopulation epidemic simulation engine built in Julia for high-performance modelling.